| p_val | avg_logFC | pct.1 | pct.2 | p_val_adj | cluster | geneId | transcriptId | |
|---|---|---|---|---|---|---|---|---|
| Pkm-ENSMUST00000034834.15 | 0.00e+00 | -1.5495424 | 0.360 | 0.884 | 0.0000000 | Glutamatergic matures | Pkm | ENSMUST00000034834.15 |
| Pkm-ENSMUST00000163694.3 | 0.00e+00 | 1.3396124 | 0.831 | 0.286 | 0.0000000 | Radial glia/precursors | Pkm | ENSMUST00000163694.3 |
| Clta-ENSMUST00000107849.9 | 0.00e+00 | 1.2948718 | 0.863 | 0.265 | 0.0000000 | Radial glia/precursors | Clta | ENSMUST00000107849.9 |
| Clta-ENSMUST00000170241.7 | 0.00e+00 | -0.9428323 | 0.482 | 0.873 | 0.0000000 | Glutamatergic matures | Clta | ENSMUST00000170241.7 |
| Cdc42-ENSMUST00000030417.9 | 0.00e+00 | 1.0294242 | 0.773 | 0.238 | 0.0000000 | Radial glia/precursors | Cdc42 | ENSMUST00000030417.9 |
| Cdc42-ENSMUST00000051477.12 | 3.70e-06 | -0.3158706 | 0.572 | 0.725 | 0.1032030 | Glutamatergic matures | Cdc42 | ENSMUST00000051477.12 |
| Tecr-ENSMUST00000165740.8 | 0.00e+00 | 0.8471638 | 0.777 | 0.370 | 0.0000000 | Radial glia/precursors | Tecr | ENSMUST00000165740.8 |
| Tecr-ENSMUST00000019382.16 | 4.42e-05 | -0.2651514 | 0.626 | 0.788 | 1.0000000 | Glutamatergic matures | Tecr | ENSMUST00000019382.16 |
| Myl6-ENSMUST00000218127.1 | 0.00e+00 | -0.7690466 | 0.291 | 0.635 | 0.0000000 | Glutamatergic matures | Myl6 | ENSMUST00000218127.1 |
| Myl6-ENSMUST00000164181.1 | 0.00e+00 | 0.4205906 | 0.835 | 0.667 | 0.0000002 | Radial glia/precursors | Myl6 | ENSMUST00000164181.1 |
| Myl6-ENSMUST00000219554.1 | 1.95e-05 | 0.3239296 | 0.277 | 0.116 | 0.5474868 | Radial glia/precursors | Myl6 | ENSMUST00000219554.1 |
| Dclk1-ENSMUST00000200348.1 | 1.00e-07 | 0.4490286 | 0.612 | 0.360 | 0.0014327 | Radial glia/precursors | Dclk1 | ENSMUST00000200348.1 |
| Dclk1-ENSMUST00000167204.7 | 2.25e-04 | -0.3035991 | 0.201 | 0.339 | 1.0000000 | Glutamatergic matures | Dclk1 | ENSMUST00000167204.7 |
| p_val | avg_logFC | pct.1 | pct.2 | p_val_adj | cluster | geneId | transcriptId | |
|---|---|---|---|---|---|---|---|---|
| Pkm-ENSMUST00000034834.15 | 0.0000000 | -1.5783063 | 0.360 | 0.931 | 0.0000000 | Glutamatergic matures | Pkm | ENSMUST00000034834.15 |
| Pkm-ENSMUST00000163694.3 | 0.0000000 | 0.7351223 | 0.831 | 0.471 | 0.0000000 | Intermediate progenitors | Pkm | ENSMUST00000163694.3 |
| Clta-ENSMUST00000107849.9 | 0.0000000 | 0.6576249 | 0.863 | 0.540 | 0.0000000 | Intermediate progenitors | Clta | ENSMUST00000107849.9 |
| Clta-ENSMUST00000170241.7 | 0.0000000 | -0.8767158 | 0.482 | 0.736 | 0.0000000 | Glutamatergic matures | Clta | ENSMUST00000170241.7 |
| Myl6-ENSMUST00000218127.1 | 0.0000000 | -0.8498262 | 0.291 | 0.609 | 0.0000001 | Glutamatergic matures | Myl6 | ENSMUST00000218127.1 |
| Myl6-ENSMUST00000164181.1 | 0.0000013 | 0.4176744 | 0.835 | 0.563 | 0.0352598 | Intermediate progenitors | Myl6 | ENSMUST00000164181.1 |
| Rpl21-ENSMUST00000035983.11 | 0.0000000 | -0.3455140 | 0.971 | 0.989 | 0.0003371 | Glutamatergic matures | Rpl21 | ENSMUST00000035983.11 |
| Rpl21-ENSMUST00000099272.2 | 0.0001938 | 0.2767585 | 0.288 | 0.080 | 1.0000000 | Intermediate progenitors | Rpl21 | ENSMUST00000099272.2 |
| Ogt-ENSMUST00000155792.1 | 0.0001024 | 0.4379264 | 0.594 | 0.310 | 1.0000000 | Intermediate progenitors | Ogt | ENSMUST00000155792.1 |
| Ogt-ENSMUST00000150161.7 | 0.0009047 | -0.3585066 | 0.205 | 0.356 | 1.0000000 | Glutamatergic matures | Ogt | ENSMUST00000150161.7 |
| Emc10-ENSMUST00000118808.7 | 0.0001107 | 0.4032990 | 0.655 | 0.379 | 1.0000000 | Intermediate progenitors | Emc10 | ENSMUST00000118808.7 |
| Emc10-ENSMUST00000118515.7 | 0.0003017 | -0.4175709 | 0.374 | 0.506 | 1.0000000 | Glutamatergic matures | Emc10 | ENSMUST00000118515.7 |
| Tcf4-ENSMUST00000126946.2 | 0.0006884 | -0.3487926 | 0.737 | 0.793 | 1.0000000 | Glutamatergic matures | Tcf4 | ENSMUST00000126946.2 |
| Tcf4-ENSMUST00000202477.3 | 0.0016501 | 0.2800892 | 0.255 | 0.092 | 1.0000000 | Intermediate progenitors | Tcf4 | ENSMUST00000202477.3 |
| p_val | avg_logFC | pct.1 | pct.2 | p_val_adj | cluster | geneId | transcriptId | |
|---|---|---|---|---|---|---|---|---|
| Clta-ENSMUST00000107849.9 | 0.0000000 | 1.4000766 | 0.792 | 0.265 | 0.0000000 | Radial glia/precursors | Clta | ENSMUST00000107849.9 |
| Clta-ENSMUST00000170241.7 | 0.0000000 | -0.8375791 | 0.301 | 0.873 | 0.0000000 | GABAergic matures | Clta | ENSMUST00000170241.7 |
| Pkm-ENSMUST00000034834.15 | 0.0000000 | -1.0768311 | 0.387 | 0.884 | 0.0000000 | GABAergic matures | Pkm | ENSMUST00000034834.15 |
| Pkm-ENSMUST00000163694.3 | 0.0000000 | 1.1588665 | 0.659 | 0.286 | 0.0000000 | Radial glia/precursors | Pkm | ENSMUST00000163694.3 |
| Myl6-ENSMUST00000218127.1 | 0.0000000 | -0.8381279 | 0.121 | 0.635 | 0.0000000 | GABAergic matures | Myl6 | ENSMUST00000218127.1 |
| Myl6-ENSMUST00000164181.1 | 0.0000000 | 0.4781358 | 0.740 | 0.667 | 0.0001954 | Radial glia/precursors | Myl6 | ENSMUST00000164181.1 |
| Tecr-ENSMUST00000165740.8 | 0.0000000 | 0.9016001 | 0.595 | 0.370 | 0.0000001 | Radial glia/precursors | Tecr | ENSMUST00000165740.8 |
| Tecr-ENSMUST00000019382.16 | 0.0000000 | -0.3962348 | 0.370 | 0.788 | 0.0004211 | GABAergic matures | Tecr | ENSMUST00000019382.16 |
| Snrpa-ENSMUST00000122202.7 | 0.0000000 | -0.2887743 | 0.092 | 0.407 | 0.0000305 | GABAergic matures | Snrpa | ENSMUST00000122202.7 |
| Snrpa-ENSMUST00000126211.1 | 0.5937879 | 0.2675566 | 0.208 | 0.286 | 1.0000000 | Radial glia/precursors | Snrpa | ENSMUST00000126211.1 |
| Smarcb1-ENSMUST00000121304.1 | 0.0000000 | -0.3205163 | 0.121 | 0.450 | 0.0000804 | GABAergic matures | Smarcb1 | ENSMUST00000121304.1 |
| Smarcb1-ENSMUST00000000925.9 | 0.1227085 | 0.2716136 | 0.538 | 0.683 | 1.0000000 | Radial glia/precursors | Smarcb1 | ENSMUST00000000925.9 |
| Cdc42-ENSMUST00000030417.9 | 0.0000000 | 0.8456571 | 0.434 | 0.238 | 0.0009676 | Radial glia/precursors | Cdc42 | ENSMUST00000030417.9 |
| Cdc42-ENSMUST00000051477.12 | 0.0000689 | -0.2704602 | 0.410 | 0.725 | 1.0000000 | GABAergic matures | Cdc42 | ENSMUST00000051477.12 |
| p_val | avg_logFC | pct.1 | pct.2 | p_val_adj | cluster | geneId | transcriptId | |
|---|---|---|---|---|---|---|---|---|
| Pkm-ENSMUST00000034834.15 | 0.0000000 | -1.1055950 | 0.387 | 0.931 | 0.0000000 | GABAergic matures | Pkm | ENSMUST00000034834.15 |
| Pkm-ENSMUST00000163694.3 | 0.0000086 | 0.5543764 | 0.659 | 0.471 | 0.2411199 | Intermediate progenitors | Pkm | ENSMUST00000163694.3 |
| Myl6-ENSMUST00000218127.1 | 0.0000000 | -0.9189075 | 0.121 | 0.609 | 0.0000000 | GABAergic matures | Myl6 | ENSMUST00000218127.1 |
| Myl6-ENSMUST00000164181.1 | 0.0000128 | 0.4752196 | 0.740 | 0.563 | 0.3589580 | Intermediate progenitors | Myl6 | ENSMUST00000164181.1 |
| Emc10-ENSMUST00000118515.7 | 0.0000000 | -0.6523407 | 0.116 | 0.506 | 0.0000023 | GABAergic matures | Emc10 | ENSMUST00000118515.7 |
| Emc10-ENSMUST00000118808.7 | 0.3169708 | 0.2939914 | 0.358 | 0.379 | 1.0000000 | Intermediate progenitors | Emc10 | ENSMUST00000118808.7 |
| Clta-ENSMUST00000170241.7 | 0.0000000 | -0.7714626 | 0.301 | 0.736 | 0.0000060 | GABAergic matures | Clta | ENSMUST00000170241.7 |
| Clta-ENSMUST00000107849.9 | 0.0000000 | 0.7628298 | 0.792 | 0.540 | 0.0000188 | Intermediate progenitors | Clta | ENSMUST00000107849.9 |
| Tecr-ENSMUST00000165740.8 | 0.0000002 | 0.8051937 | 0.595 | 0.379 | 0.0053430 | Intermediate progenitors | Tecr | ENSMUST00000165740.8 |
| Tecr-ENSMUST00000019382.16 | 0.0052212 | -0.2698338 | 0.370 | 0.598 | 1.0000000 | GABAergic matures | Tecr | ENSMUST00000019382.16 |
| Ppdpf-ENSMUST00000138800.7 | 0.0002458 | -0.2980828 | 0.127 | 0.345 | 1.0000000 | GABAergic matures | Ppdpf | ENSMUST00000138800.7 |
| Ppdpf-ENSMUST00000146089.7 | 0.0190259 | 0.2732082 | 0.509 | 0.437 | 1.0000000 | Intermediate progenitors | Ppdpf | ENSMUST00000146089.7 |
| Dnaja1-ENSMUST00000030118.9 | 0.0075899 | -0.2504386 | 0.555 | 0.805 | 1.0000000 | GABAergic matures | Dnaja1 | ENSMUST00000030118.9 |
| Dnaja1-ENSMUST00000164233.7 | 0.1172888 | 0.3174415 | 0.324 | 0.299 | 1.0000000 | Intermediate progenitors | Dnaja1 | ENSMUST00000164233.7 |
c(“Glutamatergic matures”,“Glutamatergic imatures”,“Intermediate progenitors”)
## [1] 378
## [1] 54
##
## Intermediate progenitors Glutamatergic imatures
## clta5ex 31 16
## clta6ex 30 143
##
## Glutamatergic matures
## clta5ex 7
## clta6ex 205
| Intermediate progenitors_p_val | Intermediate progenitors_avg_logFC | Intermediate progenitors_pct.1 | Intermediate progenitors_pct.2 | Intermediate progenitors_p_val_adj | Glutamatergic imatures_p_val | Glutamatergic imatures_avg_logFC | Glutamatergic imatures_pct.1 | Glutamatergic imatures_pct.2 | Glutamatergic imatures_p_val_adj | Glutamatergic matures_p_val | Glutamatergic matures_avg_logFC | Glutamatergic matures_pct.1 | Glutamatergic matures_pct.2 | Glutamatergic matures_p_val_adj | max_pval | minimump_p_val | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Rbfox2 | 0.0000427 | 0.7204415 | 0.900 | 0.516 | 0.0033342 | 0.0716431 | 0.2740217 | 0.909 | 0.875 | 1 | 0.0943051 | 0.2930662 | 0.941 | 1.000 | 1 | 0.0943051 | 0.0001282 |
| Khdrbs3 | 0.0039683 | 0.3324541 | 0.367 | 0.065 | 0.3095248 | 0.0867985 | 0.1770326 | 0.280 | 0.062 | 1 | 0.2760771 | 0.1675252 | 0.400 | 0.143 | 1 | 0.2760771 | 0.0118576 |
| Celf4 | 0.0053529 | 0.5865092 | 0.733 | 0.387 | 0.4175251 | 0.0953734 | 0.2797868 | 0.727 | 0.500 | 1 | 0.3966168 | -0.4739896 | 0.771 | 0.857 | 1 | 0.3966168 | 0.0159729 |
| Rbfox1 | 0.0055290 | 0.3278486 | 0.500 | 0.161 | 0.4312655 | 0.3039666 | 0.2480623 | 0.734 | 0.562 | 1 | 0.4680649 | 0.1960579 | 0.761 | 0.714 | 1 | 0.4680649 | 0.0164956 |
| Khdrbs2 | 0.0091248 | 0.3381261 | 0.267 | 0.032 | 0.7117334 | 0.2069700 | 0.1566577 | 0.420 | 0.250 | 1 | 0.5585485 | 0.1449749 | 0.741 | 0.571 | 1 | 0.5585485 | 0.0271253 |
| Rbm8a | 0.0330681 | -0.2715906 | 0.800 | 0.903 | 1.0000000 | 0.6470755 | 0.1084163 | 0.776 | 0.750 | 1 | 0.4746808 | 0.1398744 | 0.888 | 0.714 | 1 | 0.6470755 | 0.0959601 |
| Srsf9 | 0.0354839 | -0.2473709 | 0.167 | 0.419 | 1.0000000 | 0.4854427 | -0.1230420 | 0.259 | 0.312 | 1 | 0.2450503 | 0.1848097 | 0.380 | 0.143 | 1 | 0.4854427 | 0.1027192 |
| Rbm17 | 0.4316580 | 0.2007831 | 0.533 | 0.516 | 1.0000000 | 0.0765288 | 0.2715140 | 0.643 | 0.375 | 1 | 0.6014612 | 0.1506773 | 0.732 | 0.571 | 1 | 0.6014612 | 0.2124645 |
| Rbm6 | 0.1007090 | 0.1927631 | 0.633 | 0.419 | 1.0000000 | 0.8924127 | -0.1230384 | 0.552 | 0.500 | 1 | 0.2538921 | 0.2094600 | 0.644 | 0.286 | 1 | 0.8924127 | 0.2727215 |
| Tia1 | 0.1123719 | 0.2514376 | 0.900 | 0.903 | 1.0000000 | 0.2212885 | -0.2267769 | 0.881 | 1.000 | 1 | 0.1512979 | -0.1568834 | 0.946 | 1.000 | 1 | 0.2212885 | 0.3006523 |
| Rbm15b | 0.1928203 | 0.1689013 | 0.300 | 0.161 | 1.0000000 | 0.2518637 | -0.1738750 | 0.203 | 0.312 | 1 | 0.1273790 | 0.2229904 | 0.259 | 0.000 | 1 | 0.2518637 | 0.3355275 |
| Rbm28 | 0.1281803 | -0.1929628 | 0.300 | 0.516 | 1.0000000 | 0.2203273 | 0.2024979 | 0.343 | 0.188 | 1 | 0.1624234 | 0.2547265 | 0.429 | 0.143 | 1 | 0.2203273 | 0.3373564 |
| Rbm34 | 0.5512935 | 0.1048171 | 0.367 | 0.323 | 1.0000000 | 0.1927078 | 0.1375243 | 0.315 | 0.125 | 1 | 0.4963841 | 0.1028168 | 0.473 | 0.286 | 1 | 0.5512935 | 0.4738710 |
| Elavl4 | 0.3203210 | -0.2451712 | 0.700 | 0.710 | 1.0000000 | 0.2318366 | -0.2071666 | 0.566 | 0.625 | 1 | 0.5864090 | -0.1469218 | 0.522 | 0.571 | 1 | 0.5864090 | 0.5467260 |
| Rbm25 | 0.9023799 | -0.1263216 | 0.867 | 0.968 | 1.0000000 | 0.2462796 | 0.1161778 | 0.958 | 0.938 | 1 | 0.5791880 | 0.1482548 | 0.946 | 0.857 | 1 | 0.9023799 | 0.5718156 |
| Hnrnpl | 0.4183937 | 0.2082406 | 0.433 | 0.387 | 1.0000000 | 0.5237274 | -0.1226461 | 0.420 | 0.438 | 1 | 0.3530612 | -0.1931463 | 0.585 | 0.714 | 1 | 0.5237274 | 0.7292368 |
c(“GABAergic imatures”,“GABAergic matures”)
## [1] 177
## [1] 49
##
## GABAergic imatures GABAergic matures
## clta5ex 36 13
## clta6ex 56 121
| GABAergic imatures_p_val | GABAergic imatures_avg_logFC | GABAergic imatures_pct.1 | GABAergic imatures_pct.2 | GABAergic imatures_p_val_adj | GABAergic matures_p_val | GABAergic matures_avg_logFC | GABAergic matures_pct.1 | GABAergic matures_pct.2 | GABAergic matures_p_val_adj | max_pval | minimump_p_val | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Rbm8a | 0.2069727 | -0.1823754 | 0.679 | 0.722 | 1 | 0.0204891 | -0.4961383 | 0.719 | 0.769 | 1 | 0.2069727 | 0.0405585 |
| Rbfox3 | 0.0289644 | 0.2335917 | 0.125 | 0.000 | 1 | 0.0870656 | 0.4921119 | 0.306 | 0.077 | 1 | 0.0870656 | 0.0570898 |
| Rbfox1 | 0.0458238 | 0.3159214 | 0.304 | 0.111 | 1 | 0.0920836 | -0.1587762 | 0.182 | 0.385 | 1 | 0.0920836 | 0.0895477 |
| Rbm28 | 0.0548879 | -0.2773787 | 0.179 | 0.333 | 1 | 0.4041049 | -0.1229073 | 0.223 | 0.308 | 1 | 0.4041049 | 0.1067630 |
| Hnrnpa1 | 0.2411820 | 0.1061077 | 1.000 | 0.972 | 1 | 0.0677452 | -0.1988541 | 0.983 | 1.000 | 1 | 0.2411820 | 0.1309010 |
| Rbm34 | 0.0767218 | -0.2526024 | 0.179 | 0.333 | 1 | 0.2881425 | 0.1690053 | 0.215 | 0.077 | 1 | 0.2881425 | 0.1475574 |
| Rbm22 | 0.0804714 | 0.2399034 | 0.500 | 0.306 | 1 | 0.1253799 | -0.3535297 | 0.372 | 0.538 | 1 | 0.1253799 | 0.1544672 |
| Nova2 | 0.1028911 | -0.2290076 | 0.179 | 0.333 | 1 | 0.4763298 | -0.2470994 | 0.223 | 0.308 | 1 | 0.4763298 | 0.1951956 |
| Khdrbs1 | 0.3936772 | 0.1069216 | 0.857 | 0.889 | 1 | 0.2568099 | 0.2009419 | 0.785 | 0.692 | 1 | 0.3936772 | 0.4476684 |
| Rbm48 | 0.4152642 | -0.1095102 | 0.143 | 0.194 | 1 | 0.2956329 | 0.2299850 | 0.190 | 0.077 | 1 | 0.4152642 | 0.5038670 |
| Srsf3 | 0.4990203 | -0.1124026 | 0.946 | 1.000 | 1 | 0.3246904 | 0.2329861 | 0.950 | 0.846 | 1 | 0.4990203 | 0.5439569 |
| Srsf1 | 0.3343555 | -0.1328446 | 0.589 | 0.639 | 1 | 0.3547291 | 0.2763521 | 0.488 | 0.385 | 1 | 0.3547291 | 0.5569174 |
| Celf4 | 0.3456811 | -0.1351474 | 0.768 | 0.889 | 1 | 0.5665273 | 0.1908124 | 0.810 | 0.846 | 1 | 0.5665273 | 0.5718667 |
| Hnrnpl | 0.3492847 | -0.1867708 | 0.393 | 0.444 | 1 | 0.6364242 | 0.1402803 | 0.331 | 0.308 | 1 | 0.6364242 | 0.5765697 |
| Srsf11 | 0.5909726 | -0.1034970 | 0.839 | 0.806 | 1 | 0.4143172 | -0.1725061 | 0.868 | 1.000 | 1 | 0.5909726 | 0.6569757 |
| Srsf7 | 0.4759051 | -0.1255966 | 0.750 | 0.778 | 1 | 0.6386502 | 0.1679206 | 0.760 | 0.692 | 1 | 0.6386502 | 0.7253245 |
| Srsf10 | 0.5093744 | 0.1439011 | 0.536 | 0.472 | 1 | 0.4906122 | 0.2481042 | 0.496 | 0.462 | 1 | 0.5093744 | 0.7405240 |
| Rbm10 | 0.5478488 | 0.1031773 | 0.161 | 0.111 | 1 | 0.4954312 | 0.1486100 | 0.240 | 0.154 | 1 | 0.5478488 | 0.7454104 |
sessionInfo()
## R version 3.5.2 (2018-12-20)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Debian GNU/Linux buster/sid
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3
## LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.3.5.so
##
## locale:
## [1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8
## [5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8
## [7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] metap_1.1 cowplot_0.9.4 ggrepel_0.8.0
## [4] xtable_1.8-3 knitr_1.21 RColorBrewer_1.1-2
## [7] forcats_0.4.0 stringr_1.3.1 purrr_0.3.0
## [10] readr_1.3.1 tidyr_0.8.2 tibble_2.0.1
## [13] ggplot2_3.1.0 tidyverse_1.2.1 pheatmap_1.0.12
## [16] dplyr_0.7.8 Seurat_3.0.0.9000 BiocStyle_2.10.0
##
## loaded via a namespace (and not attached):
## [1] Rtsne_0.15 colorspace_1.4-0 ggridges_0.5.1
## [4] rstudioapi_0.10 listenv_0.7.0 npsurv_0.4-0
## [7] lubridate_1.7.4 xml2_1.2.0 codetools_0.2-16
## [10] splines_3.5.2 R.methodsS3_1.7.1 lsei_1.2-0
## [13] jsonlite_1.6 broom_0.5.1 ica_1.0-2
## [16] cluster_2.0.7-1 png_0.1-7 R.oo_1.22.0
## [19] BiocManager_1.30.4 compiler_3.5.2 httr_1.4.0
## [22] backports_1.1.3 assertthat_0.2.0 Matrix_1.2-15
## [25] lazyeval_0.2.1 cli_1.0.1 htmltools_0.3.6
## [28] tools_3.5.2 bindrcpp_0.2.2 rsvd_1.0.0
## [31] igraph_1.2.4 gtable_0.2.0 glue_1.3.0
## [34] RANN_2.6.1 Rcpp_1.0.0 cellranger_1.1.0
## [37] gdata_2.18.0 ape_5.3 nlme_3.1-137
## [40] gbRd_0.4-11 lmtest_0.9-36 xfun_0.4
## [43] globals_0.12.4 rvest_0.3.2 irlba_2.3.3
## [46] gtools_3.8.1 future_1.12.0 MASS_7.3-51.1
## [49] zoo_1.8-4 scales_1.0.0 hms_0.4.2
## [52] parallel_3.5.2 yaml_2.2.0 reticulate_1.11.1
## [55] pbapply_1.4-0 stringi_1.2.4 highr_0.7
## [58] caTools_1.17.1.1 bibtex_0.4.2 Rdpack_0.10-1
## [61] SDMTools_1.1-221 rlang_0.3.1 pkgconfig_2.0.2
## [64] bitops_1.0-6 evaluate_0.12 lattice_0.20-38
## [67] ROCR_1.0-7 bindr_0.1.1 htmlwidgets_1.3
## [70] labeling_0.3 tidyselect_0.2.5 plyr_1.8.4
## [73] magrittr_1.5 bookdown_0.9 R6_2.3.0
## [76] gplots_3.0.1.1 generics_0.0.2 pillar_1.3.1
## [79] haven_2.1.0 withr_2.1.2 fitdistrplus_1.0-14
## [82] survival_2.43-3 future.apply_1.2.0 tsne_0.1-3
## [85] modelr_0.1.4 crayon_1.3.4 KernSmooth_2.23-15
## [88] plotly_4.8.0 rmarkdown_1.11 grid_3.5.2
## [91] readxl_1.3.1 data.table_1.12.0 digest_0.6.18
## [94] R.utils_2.8.0 munsell_0.5.0 viridisLite_0.3.0